Monitoring the microbiome for food safety and quality using deep shotgun sequencing

ARTICLE OPEN Monitoring the microbiome for food safety and quality using deep shotgun sequencing Kristen L. Beck 1,2,9 ✉, Niina Haiminen 1,3,9 , David Chambliss 1,2 , Stefan Edlund 1,2 , Mark Kunitomi 1,2 , B. Carol Huang 1,4 , Nguyet Kong 1,4 , Balasubramanian Ganesan 1,5,6 , Robert Baker 1,5 , Peter Markwell1,5 , Ban Kawas 1,2 , Matthew Davis1,2 , Robert J. Prill 1,2 , Harsha Krishnareddy 1,2 , Ed Seabolt 1,2 , Carl H. Marlowe 1,7 , Sophie Pierre 1,8 , André Quintanar 1,8 , Laxmi Parida 1,3...